Wing Lab KAUST
Rice Population Reference Panel
We have shared our four strucutral variation workflows in the github page.
Please follow the link fo find the full versions of the workflows.
SV link .
Below are the list of tools in the 4 workflows.
workflow 1: call SVs (INVs and PAVs), by NGMLR + SVIM, i.e. INV and DEL (PAV)
workflow 2: call SVs (INVs and PAVs), by NGMLR + sniffles, i.e. INV and DEL (PAV)
workflow 3: call SVs (INVs and PAVs), including INV, by minimap2 and syri
workflow 4: call SVs (INVs and PAVs), by numcer and syri